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alphafold monomer v2.0 pipeline  (Deepmind Technologies Ltd)

 
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    Structured Review

    Deepmind Technologies Ltd alphafold monomer v2.0 pipeline
    The constructed NEST models. ( A ) The sequence alignment results between PlpD and NEST. Identical residues have been boxed in the black color. Secondary structures of PlpD (shown on the top of the sequence) and two NEST models built by MODELLER 10.3 and the AlphaFold2 (shown below the sequence) are displayed. β-strands are shown as arrows colored in cream and α-helices are shown as rectangles colored in blue. ( B , C ) The overall structure models of NEST built by MODELLER 10.3 ( B ) and AlphaFold2 ( C ). ( D , E ) The overlay of <t>AlphaFold</t> model and MODELLER model ( D ) and the overlay of the MODELLER model with the PlpD structure ( E ). The PlpD structure, the MODELLER model, and the AlphaFold model are colored blue, green, and cream, respectively.
    Alphafold Monomer V2.0 Pipeline, supplied by Deepmind Technologies Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/alphafold+monomer+v2%2E0+pipeline/pmc10708158-99-9-27?v=Deepmind+Technologies+Ltd
    Average 90 stars, based on 1 article reviews
    alphafold monomer v2.0 pipeline - by Bioz Stars, 2026-08
    90/100 stars

    Images

    1) Product Images from "Computational Modeling Study of the Binding of Aging and Non-Aging Inhibitors with Neuropathy Target Esterase"

    Article Title: Computational Modeling Study of the Binding of Aging and Non-Aging Inhibitors with Neuropathy Target Esterase

    Journal: Molecules

    doi: 10.3390/molecules28237747

    The constructed NEST models. ( A ) The sequence alignment results between PlpD and NEST. Identical residues have been boxed in the black color. Secondary structures of PlpD (shown on the top of the sequence) and two NEST models built by MODELLER 10.3 and the AlphaFold2 (shown below the sequence) are displayed. β-strands are shown as arrows colored in cream and α-helices are shown as rectangles colored in blue. ( B , C ) The overall structure models of NEST built by MODELLER 10.3 ( B ) and AlphaFold2 ( C ). ( D , E ) The overlay of AlphaFold model and MODELLER model ( D ) and the overlay of the MODELLER model with the PlpD structure ( E ). The PlpD structure, the MODELLER model, and the AlphaFold model are colored blue, green, and cream, respectively.
    Figure Legend Snippet: The constructed NEST models. ( A ) The sequence alignment results between PlpD and NEST. Identical residues have been boxed in the black color. Secondary structures of PlpD (shown on the top of the sequence) and two NEST models built by MODELLER 10.3 and the AlphaFold2 (shown below the sequence) are displayed. β-strands are shown as arrows colored in cream and α-helices are shown as rectangles colored in blue. ( B , C ) The overall structure models of NEST built by MODELLER 10.3 ( B ) and AlphaFold2 ( C ). ( D , E ) The overlay of AlphaFold model and MODELLER model ( D ) and the overlay of the MODELLER model with the PlpD structure ( E ). The PlpD structure, the MODELLER model, and the AlphaFold model are colored blue, green, and cream, respectively.

    Techniques Used: Construct, Sequencing, Cream

    The overlay of the overall structures of NEST models and important active residues. ( A , B ) The enlarged view of the predicted active site of NEST. Important residues, such as Ser1014, Asp1008, and Asp1134 are shown as sticks. Distances between Ser1014 Oγ and Asp1008 O δ2 and Ser966 Oγ and Asp1134 O δ2 are shown as dotted lines. ( C , D ) The overlay of important residues (including Ser1014, Asp1134, and oxyanion hole residues between AlphaFold model and MODELLER model ( C ) and between the MODELLER model and the PlpD ( D ). The PlpD structure, the MODELLER model, and the AlphaFold model are colored blue, green, and cream, respectively.
    Figure Legend Snippet: The overlay of the overall structures of NEST models and important active residues. ( A , B ) The enlarged view of the predicted active site of NEST. Important residues, such as Ser1014, Asp1008, and Asp1134 are shown as sticks. Distances between Ser1014 Oγ and Asp1008 O δ2 and Ser966 Oγ and Asp1134 O δ2 are shown as dotted lines. ( C , D ) The overlay of important residues (including Ser1014, Asp1134, and oxyanion hole residues between AlphaFold model and MODELLER model ( C ) and between the MODELLER model and the PlpD ( D ). The PlpD structure, the MODELLER model, and the AlphaFold model are colored blue, green, and cream, respectively.

    Techniques Used: Cream

    Predicted CDOCKER energy of 5 NTE inhibitors and 1 substrate with NEST AlphaFold model by molecular docking.
    Figure Legend Snippet: Predicted CDOCKER energy of 5 NTE inhibitors and 1 substrate with NEST AlphaFold model by molecular docking.

    Techniques Used:



    Similar Products

    alphafold monomer v2.0 pipeline  (Deepmind Technologies Ltd)
    90
    Deepmind Technologies Ltd alphafold monomer v2.0 pipeline
    The constructed NEST models. ( A ) The sequence alignment results between PlpD and NEST. Identical residues have been boxed in the black color. Secondary structures of PlpD (shown on the top of the sequence) and two NEST models built by MODELLER 10.3 and the AlphaFold2 (shown below the sequence) are displayed. β-strands are shown as arrows colored in cream and α-helices are shown as rectangles colored in blue. ( B , C ) The overall structure models of NEST built by MODELLER 10.3 ( B ) and AlphaFold2 ( C ). ( D , E ) The overlay of <t>AlphaFold</t> model and MODELLER model ( D ) and the overlay of the MODELLER model with the PlpD structure ( E ). The PlpD structure, the MODELLER model, and the AlphaFold model are colored blue, green, and cream, respectively.
    Alphafold Monomer V2.0 Pipeline, supplied by Deepmind Technologies Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/alphafold+monomer+v2%2E0+pipeline/pmc10708158-99-9-27?v=Deepmind+Technologies+Ltd
    Average 90 stars, based on 1 article reviews
    alphafold monomer v2.0 pipeline - by Bioz Stars, 2026-08
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    The constructed NEST models. ( A ) The sequence alignment results between PlpD and NEST. Identical residues have been boxed in the black color. Secondary structures of PlpD (shown on the top of the sequence) and two NEST models built by MODELLER 10.3 and the AlphaFold2 (shown below the sequence) are displayed. β-strands are shown as arrows colored in cream and α-helices are shown as rectangles colored in blue. ( B , C ) The overall structure models of NEST built by MODELLER 10.3 ( B ) and AlphaFold2 ( C ). ( D , E ) The overlay of AlphaFold model and MODELLER model ( D ) and the overlay of the MODELLER model with the PlpD structure ( E ). The PlpD structure, the MODELLER model, and the AlphaFold model are colored blue, green, and cream, respectively.

    Journal: Molecules

    Article Title: Computational Modeling Study of the Binding of Aging and Non-Aging Inhibitors with Neuropathy Target Esterase

    doi: 10.3390/molecules28237747

    Figure Lengend Snippet: The constructed NEST models. ( A ) The sequence alignment results between PlpD and NEST. Identical residues have been boxed in the black color. Secondary structures of PlpD (shown on the top of the sequence) and two NEST models built by MODELLER 10.3 and the AlphaFold2 (shown below the sequence) are displayed. β-strands are shown as arrows colored in cream and α-helices are shown as rectangles colored in blue. ( B , C ) The overall structure models of NEST built by MODELLER 10.3 ( B ) and AlphaFold2 ( C ). ( D , E ) The overlay of AlphaFold model and MODELLER model ( D ) and the overlay of the MODELLER model with the PlpD structure ( E ). The PlpD structure, the MODELLER model, and the AlphaFold model are colored blue, green, and cream, respectively.

    Article Snippet: Another model of NEST was predicted by using the AlphaFold Monomer v2.0 pipeline from AlphaFold Protein Structure Database ( https://alphafold.ebi.ac.uk/ accessed on 24 October 2022) developed by DeepMind and EMBL-EBI [ ].

    Techniques: Construct, Sequencing, Cream

    The overlay of the overall structures of NEST models and important active residues. ( A , B ) The enlarged view of the predicted active site of NEST. Important residues, such as Ser1014, Asp1008, and Asp1134 are shown as sticks. Distances between Ser1014 Oγ and Asp1008 O δ2 and Ser966 Oγ and Asp1134 O δ2 are shown as dotted lines. ( C , D ) The overlay of important residues (including Ser1014, Asp1134, and oxyanion hole residues between AlphaFold model and MODELLER model ( C ) and between the MODELLER model and the PlpD ( D ). The PlpD structure, the MODELLER model, and the AlphaFold model are colored blue, green, and cream, respectively.

    Journal: Molecules

    Article Title: Computational Modeling Study of the Binding of Aging and Non-Aging Inhibitors with Neuropathy Target Esterase

    doi: 10.3390/molecules28237747

    Figure Lengend Snippet: The overlay of the overall structures of NEST models and important active residues. ( A , B ) The enlarged view of the predicted active site of NEST. Important residues, such as Ser1014, Asp1008, and Asp1134 are shown as sticks. Distances between Ser1014 Oγ and Asp1008 O δ2 and Ser966 Oγ and Asp1134 O δ2 are shown as dotted lines. ( C , D ) The overlay of important residues (including Ser1014, Asp1134, and oxyanion hole residues between AlphaFold model and MODELLER model ( C ) and between the MODELLER model and the PlpD ( D ). The PlpD structure, the MODELLER model, and the AlphaFold model are colored blue, green, and cream, respectively.

    Article Snippet: Another model of NEST was predicted by using the AlphaFold Monomer v2.0 pipeline from AlphaFold Protein Structure Database ( https://alphafold.ebi.ac.uk/ accessed on 24 October 2022) developed by DeepMind and EMBL-EBI [ ].

    Techniques: Cream

    Predicted CDOCKER energy of 5 NTE inhibitors and 1 substrate with NEST AlphaFold model by molecular docking.

    Journal: Molecules

    Article Title: Computational Modeling Study of the Binding of Aging and Non-Aging Inhibitors with Neuropathy Target Esterase

    doi: 10.3390/molecules28237747

    Figure Lengend Snippet: Predicted CDOCKER energy of 5 NTE inhibitors and 1 substrate with NEST AlphaFold model by molecular docking.

    Article Snippet: Another model of NEST was predicted by using the AlphaFold Monomer v2.0 pipeline from AlphaFold Protein Structure Database ( https://alphafold.ebi.ac.uk/ accessed on 24 October 2022) developed by DeepMind and EMBL-EBI [ ].

    Techniques: